TheAlgorithms-C-Plus-Plus/numerical_methods/qr_decompose.h

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Major rework to improve code quality and add automation checks (#805) * delete secant method - it is identical to regula falsi * document + improvize root finding algorithms * attempt to document gaussian elimination * added file brief * commented doxygen-mainpage, added files-list link * corrected files list link path * files-list link correction - this time works :) * document successive approximations * cleaner equation * updating DIRECTORY.md * documented kmp string search * document brute force string search * document rabin-karp string search * fixed mainpage readme * doxygen v1.8.18 will suppress out the #minipage in the markdown * cpplint correction for header guard style * github action to auto format source code per cpplint standard * updated setting to add 1 space before `private` and `public` keywords * auto rename files and auto format code * added missing "run" for step * corrected asignmemt operation * fixed trim and assign syntax * added git move for renaming bad filenames * added missing pipe for trim * added missing space * use old and new fnames * store old fname using echo * move files only if there is a change in filename * put old filenames in quotes * use double quote for old filename * escape double quotes * remove old_fname * try escape characters and echo" * add file-type to find * cleanup echo * ensure all trim variables are also in quotes * try escape -quote again * remove second escpe quote * use single quote for first check * use carets instead of quotes * put variables in brackets * remove -e from echo * add debug echos * try print0 flag * find command with while instead of for-loop * find command using IFS instead * :tada: IFS fix worked - escaped quotes for git mv * protetc each word in git mv .. * filename exists in lower cases - renamed * :tada: git push enabled * updating DIRECTORY.md * git pull & then push * formatting filenames d7af6fdc8cb08578de6980d412e6e1caca1a1bcf * formatting source-code for d7af6fdc8cb08578de6980d412e6e1caca1a1bcf * remove allman break before braces * updating DIRECTORY.md * added missing comma lost in previous commit * orchestrate all workflows * fix yml indentation * force push format changes, add title to DIRECTORY.md * pull before proceeding * reorganize pull commands * use master branches for actions * rename .cc files to .cpp * added class destructor to clean up dynamic memory allocation * rename to awesome workflow * commented whole repo cpplint - added modified files lint check * removed need for cpplint * attempt to use actions/checkout@master * temporary: no dependency on cpplint * formatting filenames 153fb7b8a572aaf4561ac3d22d47e89480f11318 * formatting source-code for 153fb7b8a572aaf4561ac3d22d47e89480f11318 * updating DIRECTORY.md * fix diff filename * added comments to the code * added test case * formatting source-code for a850308fbada18c0d4b6f9a9cac5c34fc064cbae * updating DIRECTORY.md * added machine learning folder * added adaline algorithm * updating DIRECTORY.md * fixed issue [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS * add cmath for same bug: [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS * formatting source-code for f8925e482216aecd152bc898653ee9ab82213cf3 * use STL's inner_product * formatting source-code for f94a3305943d4cf00e4531857279b8032d0e9489 * added range comments * define activation function * use equal initial weights * change test2 function to predict * activation function not friend * previous commit correction * added option for predict function to return value before applying activation function as optional argument * added test case to classify points lying within a sphere * improve documentation for adaline * formatting source-code for 15ec4c3aba4fb41b81ed2b44b7154a4f7b45a898 * added cmake to geometry folder * added algorithm include for std::max * add namespace - machine_learning * add namespace - statistics * add namespace - sorting * added sorting algos to namespace sorting * added namespace string_search * formatting source-code for fd695305150777981dc2a1f256aa2be444e4f108 * added documentation to string_search namespace * feat: Add BFS and DFS algorithms to check for cycle in a directed graph * Remove const references for input of simple types Reason: overhead on access * fix bad code sorry for force push * Use pointer instead of the non-const reference because apparently google says so. * Remove a useless and possibly bad Graph constuctor overload * Explicitely specify type of vector during graph instantiation * updating DIRECTORY.md * find openMP before adding subdirectories * added kohonen self organizing map * updating DIRECTORY.md * remove older files and folders from gh-pages before adding new files * remove chronos library due to inacceptability by cpplint * use c++ specific static_cast instead * initialize radom number generator * updated image links with those from CPP repository * rename computer.... folder to numerical methods * added durand kerner method for root computation for arbitrarily large polynomials * fixed additional comma * fix cpplint errors * updating DIRECTORY.md * convert to function module * update documentation * move openmp to main loop * added two test cases * use INT16_MAX * remove return statement from omp-for loop and use "break" * run tests when no input is provided and skip tests when input polynomial is provided * while loop cannot have break - replaced with continue and check is present in the main while condition * (1) break while loop (2) skip runs on break_loop instead of hard-break * add documentation images * use long double for errors and tolerance checks * make iterator variable i local to threads * add critical secions to omp threads * bugfix: move file writing outside of the parallel loop othersie, there is no gurantee of the order of roots written to file * rename folder to data_structures * updating DIRECTORY.md * fix ambiguous symbol `size` * add data_structures to cmake * docs: enable tree view, add timestamp in footer, try clang assistaed parsing * doxygen - open links in external window * remove invalid parameter from function docs * use HTML5 img tag to resize images * move file to proper folder * fix documentations and cpplint * formatting source-code for aacaf9828c61bb0246fe0933ab8ade82128b8346 * updating DIRECTORY.md * cpplint: add braces for multiple statement if * add explicit link to badges * remove duplicate line Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * remove namespace indentation * remove file associations in settings * add author name * enable cmake in subfolders of data_structures * create and link object file * cpp lint fixes and instantiate template classes * cpp lint fixes and instantiate template classes Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * cpplint - ignore `build/include` Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * disable redundant gcc compilation in cpplint workflow Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * template header files contain function codes as well and removed redundant subfolders Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * updating DIRECTORY.md * remove semicolons after functions in a class Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * cpplint header guard style Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * remove semilon Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * added LU decomposition algorithm Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * added QR decomposition algorithm Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * use QR decomposition to find eigen values Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * updating DIRECTORY.md * use std::rand for thread safety Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * move srand to main() Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * cpplint braces correction Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * updated eigen value documentation Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * fix matrix shift doc Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * rename CONTRIBUTION.md to CONTRIBUTING.md #836 * remove 'sort alphabetical order' check * added documentation check * remove extra paranthesis * added gitpod * added gitpod link from README * attempt to add vscode gitpod extensions * update gitpod extensions * add gitpod extensions cmake-tools and git-graph * remove gitpod init and add commands * use init to one time install doxygen, graphviz, cpplint * use gitpod dockerfile * add ninja build system to docker * remove configure task * add github prebuild specs to gitpod * disable gitpod addcommit * update documentation for kohonen_som * added ode solve using forward euler method * added mid-point euler ode solver * fixed itegration step equation * added semi-implicit euler ODE solver * updating DIRECTORY.md * fix cpplint issues - lines 117 and 124 * added documentation to ode group * corrected semi-implicit euler function * updated docs and test cases better structure * replace `free` with `delete` operator * formatting source-code for f55ab50cf26d176fe56bdaffa6f0ce8023c03c18 * updating DIRECTORY.md * main function must return * added machine learning group * added kohonen som topology algorithm * fix graph image path * updating DIRECTORY.md * fix braces * use snprintf instead of sprintf * use static_cast * hardcode character buffer size * fix machine learning groups in documentation * fix missing namespace function * replace kvedala fork references to TheAlgorithms * fix bug in counting_sort Co-authored-by: github-actions <${GITHUB_ACTOR}@users.noreply.github.com> Co-authored-by: Anmol3299 <mittalanmol22@gmail.com>
2020-06-20 00:04:56 +08:00
/**
* @file
* \brief Library functions to compute [QR
* decomposition](https://en.wikipedia.org/wiki/QR_decomposition) of a given
* matrix.
* \author [Krishna Vedala](https://github.com/kvedala)
*/
#ifndef NUMERICAL_METHODS_QR_DECOMPOSE_H_
#define NUMERICAL_METHODS_QR_DECOMPOSE_H_
#include <cmath>
#include <cstdlib>
#include <iomanip>
#include <iostream>
#include <limits>
#include <numeric>
#include <valarray>
#ifdef _OPENMP
#include <omp.h>
#endif
/** \namespace qr_algorithm
* \brief Functions to compute [QR
* decomposition](https://en.wikipedia.org/wiki/QR_decomposition) of any
* rectangular matrix
*/
namespace qr_algorithm {
/**
* operator to print a matrix
*/
template <typename T>
std::ostream &operator<<(std::ostream &out,
std::valarray<std::valarray<T>> const &v) {
const int width = 12;
const char separator = ' ';
out.precision(4);
for (size_t row = 0; row < v.size(); row++) {
for (size_t col = 0; col < v[row].size(); col++)
out << std::right << std::setw(width) << std::setfill(separator)
<< v[row][col];
out << std::endl;
}
return out;
}
/**
* operator to print a vector
*/
template <typename T>
std::ostream &operator<<(std::ostream &out, std::valarray<T> const &v) {
const int width = 10;
const char separator = ' ';
out.precision(4);
for (size_t row = 0; row < v.size(); row++) {
out << std::right << std::setw(width) << std::setfill(separator)
<< v[row];
}
return out;
}
/**
* Compute dot product of two vectors of equal lengths
*
* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ and
* \f$\vec{b}=\left[b_0,b_1,b_1,...,b_L\right]\f$ then
* \f$\vec{a}\cdot\vec{b}=\displaystyle\sum_{i=0}^L a_i\times b_i\f$
*
* \returns \f$\vec{a}\cdot\vec{b}\f$
*/
template <typename T>
inline double vector_dot(const std::valarray<T> &a, const std::valarray<T> &b) {
return (a * b).sum();
// could also use following
// return std::inner_product(std::begin(a), std::end(a), std::begin(b),
// 0.f);
}
/**
* Compute magnitude of vector.
*
* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ then
* \f$\left|\vec{a}\right|=\sqrt{\displaystyle\sum_{i=0}^L a_i^2}\f$
*
* \returns \f$\left|\vec{a}\right|\f$
*/
template <typename T>
inline double vector_mag(const std::valarray<T> &a) {
double dot = vector_dot(a, a);
return std::sqrt(dot);
}
/**
* Compute projection of vector \f$\vec{a}\f$ on \f$\vec{b}\f$ defined as
* \f[\text{proj}_\vec{b}\vec{a}=\frac{\vec{a}\cdot\vec{b}}{\left|\vec{b}\right|^2}\vec{b}\f]
*
* \returns NULL if error, otherwise pointer to output
*/
template <typename T>
std::valarray<T> vector_proj(const std::valarray<T> &a,
const std::valarray<T> &b) {
double num = vector_dot(a, b);
double deno = vector_dot(b, b);
/*! check for division by zero using machine epsilon */
if (deno <= std::numeric_limits<double>::epsilon()) {
std::cerr << "[" << __func__ << "] Possible division by zero\n";
return a; // return vector a back
}
double scalar = num / deno;
return b * scalar;
}
/**
* Decompose matrix \f$A\f$ using [Gram-Schmidt
*process](https://en.wikipedia.org/wiki/QR_decomposition).
*
* \f{eqnarray*}{
* \text{given that}\quad A &=&
*\left[\mathbf{a}_1,\mathbf{a}_2,\ldots,\mathbf{a}_{N-1},\right]\\
* \text{where}\quad\mathbf{a}_i &=&
* \left[a_{0i},a_{1i},a_{2i},\ldots,a_{(M-1)i}\right]^T\quad\ldots\mbox{(column
* vectors)}\\
* \text{then}\quad\mathbf{u}_i &=& \mathbf{a}_i
*-\sum_{j=0}^{i-1}\text{proj}_{\mathbf{u}_j}\mathbf{a}_i\\
* \mathbf{e}_i &=&\frac{\mathbf{u}_i}{\left|\mathbf{u}_i\right|}\\
* Q &=& \begin{bmatrix}\mathbf{e}_0 & \mathbf{e}_1 & \mathbf{e}_2 & \dots &
* \mathbf{e}_{N-1}\end{bmatrix}\\
* R &=& \begin{bmatrix}\langle\mathbf{e}_0\,,\mathbf{a}_0\rangle &
* \langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
* \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots \\
* 0 & \langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
* \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots\\
* 0 & 0 & \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle &
* \dots\\ \vdots & \vdots & \vdots & \ddots
* \end{bmatrix}\\
* \f}
*/
template <typename T>
void qr_decompose(
const std::valarray<std::valarray<T>> &A, /**< input matrix to decompose */
std::valarray<std::valarray<T>> *Q, /**< output decomposed matrix */
std::valarray<std::valarray<T>> *R /**< output decomposed matrix */
) {
std::size_t ROWS = A.size(); // number of rows of A
std::size_t COLUMNS = A[0].size(); // number of columns of A
std::valarray<T> col_vector(ROWS);
std::valarray<T> col_vector2(ROWS);
std::valarray<T> tmp_vector(ROWS);
for (int i = 0; i < COLUMNS; i++) {
/* for each column => R is a square matrix of NxN */
int j;
R[0][i] = 0.; /* make R upper triangular */
/* get corresponding Q vector */
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (j = 0; j < ROWS; j++) {
tmp_vector[j] = A[j][i]; /* accumulator for uk */
col_vector[j] = A[j][i];
}
for (j = 0; j < i; j++) {
for (int k = 0; k < ROWS; k++) {
col_vector2[k] = Q[0][k][j];
}
col_vector2 = vector_proj(col_vector, col_vector2);
tmp_vector -= col_vector2;
}
double mag = vector_mag(tmp_vector);
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (j = 0; j < ROWS; j++) Q[0][j][i] = tmp_vector[j] / mag;
/* compute upper triangular values of R */
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (int kk = 0; kk < ROWS; kk++) {
col_vector[kk] = Q[0][kk][i];
}
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (int k = i; k < COLUMNS; k++) {
for (int kk = 0; kk < ROWS; kk++) {
col_vector2[kk] = A[kk][k];
}
R[0][i][k] = (col_vector * col_vector2).sum();
}
}
}
} // namespace qr_algorithm
#endif // NUMERICAL_METHODS_QR_DECOMPOSE_H_