TheAlgorithms-C-Plus-Plus/numerical_methods/qr_decompose.h
Krishna Vedala aaa08b0150
Major rework to improve code quality and add automation checks (#805)
* delete secant method - it is identical to regula falsi

* document + improvize root finding algorithms

* attempt to document gaussian elimination

* added file brief

* commented doxygen-mainpage, added files-list link

* corrected files list link path

* files-list link correction - this time works :)

* document successive approximations

* cleaner equation

* updating DIRECTORY.md

* documented kmp string search

* document brute force string search

* document rabin-karp string search

* fixed mainpage readme

* doxygen v1.8.18 will suppress out the #minipage in the markdown

* cpplint correction for header guard style

* github action to auto format source code per cpplint standard

* updated setting to add 1 space before `private` and `public` keywords

* auto rename files and auto format code

* added missing "run" for step

* corrected asignmemt operation

* fixed trim and assign syntax

* added git move for renaming bad filenames

* added missing pipe for trim

* added missing space

* use old and new fnames

* store old fname using echo

* move files only if there is a change in filename

* put old filenames in quotes

* use double quote for old filename

* escape double quotes

* remove old_fname

* try escape characters and echo"

* add file-type to find

* cleanup echo

* ensure all trim variables are also in quotes

* try escape -quote again

* remove second escpe quote

* use single quote for first check

* use carets instead of quotes

* put variables in brackets

* remove -e from echo

* add debug echos

* try print0 flag

* find command with while instead of for-loop

* find command using IFS instead

* 🎉 IFS fix worked - escaped quotes for git mv

* protetc each word in git mv ..

* filename exists in lower cases - renamed

* 🎉 git push enabled

* updating DIRECTORY.md

* git pull & then push

* formatting filenames d7af6fdc8c

* formatting source-code for d7af6fdc8c

* remove allman break before braces

* updating DIRECTORY.md

* added missing comma lost in previous commit

* orchestrate all workflows

* fix yml indentation

* force push format changes, add title to DIRECTORY.md

* pull before proceeding

* reorganize pull commands

* use master branches for actions

* rename .cc files to .cpp

* added class destructor to clean up dynamic memory allocation

* rename to awesome workflow

* commented whole repo cpplint - added modified files lint check

* removed need for cpplint

* attempt to use actions/checkout@master

* temporary: no dependency on cpplint

* formatting filenames 153fb7b8a5

* formatting source-code for 153fb7b8a5

* updating DIRECTORY.md

* fix diff filename

* added comments to the code

* added test case

* formatting source-code for a850308fba

* updating DIRECTORY.md

* added machine learning folder

* added adaline algorithm

* updating DIRECTORY.md

* fixed issue [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS

* add cmath for same bug: [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS

* formatting source-code for f8925e4822

* use STL's inner_product

* formatting source-code for f94a330594

* added range comments

* define activation function

* use equal initial weights

* change test2 function to predict

* activation function not friend

* previous commit correction

* added option for predict function to return value before applying activation function as optional argument

* added test case to classify points lying within a sphere

* improve documentation for adaline

* formatting source-code for 15ec4c3aba

* added cmake to geometry folder

* added algorithm include for std::max

* add namespace - machine_learning

* add namespace - statistics

* add namespace - sorting

* added sorting algos to namespace sorting

* added namespace string_search

* formatting source-code for fd69530515

* added documentation to string_search namespace

* feat: Add BFS and DFS algorithms to check for cycle in a directed graph

* Remove const references for input of simple types

Reason: overhead on access

* fix bad code

sorry for force push

* Use pointer instead of the non-const reference

because apparently google says so.

* Remove a useless and possibly bad Graph constuctor overload

* Explicitely specify type of vector during graph instantiation

* updating DIRECTORY.md

* find openMP before adding subdirectories

* added kohonen self organizing map

* updating DIRECTORY.md

* remove older files and folders from gh-pages before adding new files

* remove chronos library due to inacceptability by cpplint

* use c++ specific static_cast instead

* initialize radom number generator

* updated image links with those from CPP repository

* rename computer.... folder to numerical methods

* added durand kerner method for root computation for arbitrarily large polynomials

* fixed additional comma

* fix cpplint errors

* updating DIRECTORY.md

* convert to function module

* update documentation

* move openmp to main loop

* added two test cases

* use INT16_MAX

* remove return statement from omp-for loop and use "break"

* run tests when no input is provided and skip tests when input polynomial is provided

* while loop cannot have break - replaced with continue and check is present in the main while condition

* (1) break while loop (2) skip runs on break_loop instead of hard-break

* add documentation images

* use long double for errors and tolerance checks

* make iterator variable i local to threads

* add critical secions to omp threads

* bugfix: move file writing outside of the parallel loop
othersie, there is no gurantee of the order of roots written to file

* rename folder to data_structures

* updating DIRECTORY.md

* fix ambiguous symbol `size`

* add data_structures to cmake

* docs: enable tree view, add timestamp in footer, try clang assistaed parsing

* doxygen - open links in external window

* remove invalid parameter from function docs

* use HTML5 img tag to resize images

* move file to proper folder

* fix documentations and cpplint

* formatting source-code for aacaf9828c

* updating DIRECTORY.md

* cpplint: add braces for multiple statement if

* add explicit link to badges

* remove  duplicate line

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* remove namespace indentation

* remove file associations in settings

* add author name

* enable cmake in subfolders of data_structures

* create and link object file

* cpp lint fixes and instantiate template classes

* cpp lint fixes and instantiate template classes

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* cpplint - ignore `build/include`

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* disable redundant gcc compilation in cpplint workflow

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* template header files contain function codes as well and removed redundant subfolders

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* updating DIRECTORY.md

* remove semicolons after functions in a class

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* cpplint header guard style

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* remove semilon

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* added LU decomposition algorithm

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* added QR decomposition algorithm

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* use QR decomposition to find eigen values

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* updating DIRECTORY.md

* use std::rand for thread safety

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* move srand to main()

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* cpplint braces correction

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* updated eigen value documentation

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* fix matrix shift doc

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* rename CONTRIBUTION.md to CONTRIBUTING.md #836

* remove 'sort alphabetical order' check

* added documentation check

* remove extra paranthesis

* added gitpod

* added gitpod link from README

* attempt to add vscode gitpod extensions

* update gitpod extensions

* add gitpod extensions cmake-tools and git-graph

* remove gitpod init and add commands

* use init to one time install doxygen, graphviz, cpplint

* use gitpod dockerfile

* add ninja build system to docker

* remove configure task

* add github prebuild specs to gitpod

* disable gitpod addcommit

* update documentation for kohonen_som

* added ode solve using forward euler method

* added mid-point euler ode solver

* fixed itegration step equation

* added semi-implicit euler ODE solver

* updating DIRECTORY.md

* fix cpplint issues - lines 117 and 124

* added documentation to ode group

* corrected semi-implicit euler function

* updated docs and test cases better structure

* replace `free` with `delete` operator

* formatting source-code for f55ab50cf2

* updating DIRECTORY.md

* main function must return

* added machine learning group

* added kohonen som topology algorithm

* fix graph image path

* updating DIRECTORY.md

* fix braces

* use snprintf instead of sprintf

* use static_cast

* hardcode character buffer size

* fix machine learning groups in documentation

* fix missing namespace function

* replace kvedala fork references to TheAlgorithms

* fix bug in counting_sort

Co-authored-by: github-actions <${GITHUB_ACTOR}@users.noreply.github.com>
Co-authored-by: Anmol3299 <mittalanmol22@gmail.com>
2020-06-19 21:34:56 +05:30

211 lines
6.1 KiB
C++

/**
* @file
* \brief Library functions to compute [QR
* decomposition](https://en.wikipedia.org/wiki/QR_decomposition) of a given
* matrix.
* \author [Krishna Vedala](https://github.com/kvedala)
*/
#ifndef NUMERICAL_METHODS_QR_DECOMPOSE_H_
#define NUMERICAL_METHODS_QR_DECOMPOSE_H_
#include <cmath>
#include <cstdlib>
#include <iomanip>
#include <iostream>
#include <limits>
#include <numeric>
#include <valarray>
#ifdef _OPENMP
#include <omp.h>
#endif
/** \namespace qr_algorithm
* \brief Functions to compute [QR
* decomposition](https://en.wikipedia.org/wiki/QR_decomposition) of any
* rectangular matrix
*/
namespace qr_algorithm {
/**
* operator to print a matrix
*/
template <typename T>
std::ostream &operator<<(std::ostream &out,
std::valarray<std::valarray<T>> const &v) {
const int width = 12;
const char separator = ' ';
out.precision(4);
for (size_t row = 0; row < v.size(); row++) {
for (size_t col = 0; col < v[row].size(); col++)
out << std::right << std::setw(width) << std::setfill(separator)
<< v[row][col];
out << std::endl;
}
return out;
}
/**
* operator to print a vector
*/
template <typename T>
std::ostream &operator<<(std::ostream &out, std::valarray<T> const &v) {
const int width = 10;
const char separator = ' ';
out.precision(4);
for (size_t row = 0; row < v.size(); row++) {
out << std::right << std::setw(width) << std::setfill(separator)
<< v[row];
}
return out;
}
/**
* Compute dot product of two vectors of equal lengths
*
* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ and
* \f$\vec{b}=\left[b_0,b_1,b_1,...,b_L\right]\f$ then
* \f$\vec{a}\cdot\vec{b}=\displaystyle\sum_{i=0}^L a_i\times b_i\f$
*
* \returns \f$\vec{a}\cdot\vec{b}\f$
*/
template <typename T>
inline double vector_dot(const std::valarray<T> &a, const std::valarray<T> &b) {
return (a * b).sum();
// could also use following
// return std::inner_product(std::begin(a), std::end(a), std::begin(b),
// 0.f);
}
/**
* Compute magnitude of vector.
*
* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ then
* \f$\left|\vec{a}\right|=\sqrt{\displaystyle\sum_{i=0}^L a_i^2}\f$
*
* \returns \f$\left|\vec{a}\right|\f$
*/
template <typename T>
inline double vector_mag(const std::valarray<T> &a) {
double dot = vector_dot(a, a);
return std::sqrt(dot);
}
/**
* Compute projection of vector \f$\vec{a}\f$ on \f$\vec{b}\f$ defined as
* \f[\text{proj}_\vec{b}\vec{a}=\frac{\vec{a}\cdot\vec{b}}{\left|\vec{b}\right|^2}\vec{b}\f]
*
* \returns NULL if error, otherwise pointer to output
*/
template <typename T>
std::valarray<T> vector_proj(const std::valarray<T> &a,
const std::valarray<T> &b) {
double num = vector_dot(a, b);
double deno = vector_dot(b, b);
/*! check for division by zero using machine epsilon */
if (deno <= std::numeric_limits<double>::epsilon()) {
std::cerr << "[" << __func__ << "] Possible division by zero\n";
return a; // return vector a back
}
double scalar = num / deno;
return b * scalar;
}
/**
* Decompose matrix \f$A\f$ using [Gram-Schmidt
*process](https://en.wikipedia.org/wiki/QR_decomposition).
*
* \f{eqnarray*}{
* \text{given that}\quad A &=&
*\left[\mathbf{a}_1,\mathbf{a}_2,\ldots,\mathbf{a}_{N-1},\right]\\
* \text{where}\quad\mathbf{a}_i &=&
* \left[a_{0i},a_{1i},a_{2i},\ldots,a_{(M-1)i}\right]^T\quad\ldots\mbox{(column
* vectors)}\\
* \text{then}\quad\mathbf{u}_i &=& \mathbf{a}_i
*-\sum_{j=0}^{i-1}\text{proj}_{\mathbf{u}_j}\mathbf{a}_i\\
* \mathbf{e}_i &=&\frac{\mathbf{u}_i}{\left|\mathbf{u}_i\right|}\\
* Q &=& \begin{bmatrix}\mathbf{e}_0 & \mathbf{e}_1 & \mathbf{e}_2 & \dots &
* \mathbf{e}_{N-1}\end{bmatrix}\\
* R &=& \begin{bmatrix}\langle\mathbf{e}_0\,,\mathbf{a}_0\rangle &
* \langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
* \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots \\
* 0 & \langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
* \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots\\
* 0 & 0 & \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle &
* \dots\\ \vdots & \vdots & \vdots & \ddots
* \end{bmatrix}\\
* \f}
*/
template <typename T>
void qr_decompose(
const std::valarray<std::valarray<T>> &A, /**< input matrix to decompose */
std::valarray<std::valarray<T>> *Q, /**< output decomposed matrix */
std::valarray<std::valarray<T>> *R /**< output decomposed matrix */
) {
std::size_t ROWS = A.size(); // number of rows of A
std::size_t COLUMNS = A[0].size(); // number of columns of A
std::valarray<T> col_vector(ROWS);
std::valarray<T> col_vector2(ROWS);
std::valarray<T> tmp_vector(ROWS);
for (int i = 0; i < COLUMNS; i++) {
/* for each column => R is a square matrix of NxN */
int j;
R[0][i] = 0.; /* make R upper triangular */
/* get corresponding Q vector */
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (j = 0; j < ROWS; j++) {
tmp_vector[j] = A[j][i]; /* accumulator for uk */
col_vector[j] = A[j][i];
}
for (j = 0; j < i; j++) {
for (int k = 0; k < ROWS; k++) {
col_vector2[k] = Q[0][k][j];
}
col_vector2 = vector_proj(col_vector, col_vector2);
tmp_vector -= col_vector2;
}
double mag = vector_mag(tmp_vector);
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (j = 0; j < ROWS; j++) Q[0][j][i] = tmp_vector[j] / mag;
/* compute upper triangular values of R */
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (int kk = 0; kk < ROWS; kk++) {
col_vector[kk] = Q[0][kk][i];
}
#ifdef _OPENMP
// parallelize on threads
#pragma omp for
#endif
for (int k = i; k < COLUMNS; k++) {
for (int kk = 0; kk < ROWS; kk++) {
col_vector2[kk] = A[kk][k];
}
R[0][i][k] = (col_vector * col_vector2).sum();
}
}
}
} // namespace qr_algorithm
#endif // NUMERICAL_METHODS_QR_DECOMPOSE_H_