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* delete secant method - it is identical to regula falsi * document + improvize root finding algorithms * attempt to document gaussian elimination * added file brief * commented doxygen-mainpage, added files-list link * corrected files list link path * files-list link correction - this time works :) * document successive approximations * cleaner equation * updating DIRECTORY.md * documented kmp string search * document brute force string search * document rabin-karp string search * fixed mainpage readme * doxygen v1.8.18 will suppress out the #minipage in the markdown * cpplint correction for header guard style * github action to auto format source code per cpplint standard * updated setting to add 1 space before `private` and `public` keywords * auto rename files and auto format code * added missing "run" for step * corrected asignmemt operation * fixed trim and assign syntax * added git move for renaming bad filenames * added missing pipe for trim * added missing space * use old and new fnames * store old fname using echo * move files only if there is a change in filename * put old filenames in quotes * use double quote for old filename * escape double quotes * remove old_fname * try escape characters and echo" * add file-type to find * cleanup echo * ensure all trim variables are also in quotes * try escape -quote again * remove second escpe quote * use single quote for first check * use carets instead of quotes * put variables in brackets * remove -e from echo * add debug echos * try print0 flag * find command with while instead of for-loop * find command using IFS instead * 🎉 IFS fix worked - escaped quotes for git mv * protetc each word in git mv .. * filename exists in lower cases - renamed * 🎉 git push enabled * updating DIRECTORY.md * git pull & then push * formatting filenamesd7af6fdc8c
* formatting source-code ford7af6fdc8c
* remove allman break before braces * updating DIRECTORY.md * added missing comma lost in previous commit * orchestrate all workflows * fix yml indentation * force push format changes, add title to DIRECTORY.md * pull before proceeding * reorganize pull commands * use master branches for actions * rename .cc files to .cpp * added class destructor to clean up dynamic memory allocation * rename to awesome workflow * commented whole repo cpplint - added modified files lint check * removed need for cpplint * attempt to use actions/checkout@master * temporary: no dependency on cpplint * formatting filenames153fb7b8a5
* formatting source-code for153fb7b8a5
* updating DIRECTORY.md * fix diff filename * added comments to the code * added test case * formatting source-code fora850308fba
* updating DIRECTORY.md * added machine learning folder * added adaline algorithm * updating DIRECTORY.md * fixed issue [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS * add cmath for same bug: [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS * formatting source-code forf8925e4822
* use STL's inner_product * formatting source-code forf94a330594
* added range comments * define activation function * use equal initial weights * change test2 function to predict * activation function not friend * previous commit correction * added option for predict function to return value before applying activation function as optional argument * added test case to classify points lying within a sphere * improve documentation for adaline * formatting source-code for15ec4c3aba
* added cmake to geometry folder * added algorithm include for std::max * add namespace - machine_learning * add namespace - statistics * add namespace - sorting * added sorting algos to namespace sorting * added namespace string_search * formatting source-code forfd69530515
* added documentation to string_search namespace * feat: Add BFS and DFS algorithms to check for cycle in a directed graph * Remove const references for input of simple types Reason: overhead on access * fix bad code sorry for force push * Use pointer instead of the non-const reference because apparently google says so. * Remove a useless and possibly bad Graph constuctor overload * Explicitely specify type of vector during graph instantiation * updating DIRECTORY.md * find openMP before adding subdirectories * added kohonen self organizing map * updating DIRECTORY.md * remove older files and folders from gh-pages before adding new files * remove chronos library due to inacceptability by cpplint * use c++ specific static_cast instead * initialize radom number generator * updated image links with those from CPP repository * rename computer.... folder to numerical methods * added durand kerner method for root computation for arbitrarily large polynomials * fixed additional comma * fix cpplint errors * updating DIRECTORY.md * convert to function module * update documentation * move openmp to main loop * added two test cases * use INT16_MAX * remove return statement from omp-for loop and use "break" * run tests when no input is provided and skip tests when input polynomial is provided * while loop cannot have break - replaced with continue and check is present in the main while condition * (1) break while loop (2) skip runs on break_loop instead of hard-break * add documentation images * use long double for errors and tolerance checks * make iterator variable i local to threads * add critical secions to omp threads * bugfix: move file writing outside of the parallel loop othersie, there is no gurantee of the order of roots written to file * rename folder to data_structures * updating DIRECTORY.md * fix ambiguous symbol `size` * add data_structures to cmake * docs: enable tree view, add timestamp in footer, try clang assistaed parsing * doxygen - open links in external window * remove invalid parameter from function docs * use HTML5 img tag to resize images * move file to proper folder * fix documentations and cpplint * formatting source-code foraacaf9828c
* updating DIRECTORY.md * cpplint: add braces for multiple statement if * add explicit link to badges * remove duplicate line Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * remove namespace indentation * remove file associations in settings * add author name * enable cmake in subfolders of data_structures * create and link object file * cpp lint fixes and instantiate template classes * cpp lint fixes and instantiate template classes Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * cpplint - ignore `build/include` Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * disable redundant gcc compilation in cpplint workflow Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * template header files contain function codes as well and removed redundant subfolders Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * updating DIRECTORY.md * remove semicolons after functions in a class Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * cpplint header guard style Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * remove semilon Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * added LU decomposition algorithm Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * added QR decomposition algorithm Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * use QR decomposition to find eigen values Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * updating DIRECTORY.md * use std::rand for thread safety Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * move srand to main() Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * cpplint braces correction Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * updated eigen value documentation Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * fix matrix shift doc Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com> * rename CONTRIBUTION.md to CONTRIBUTING.md #836 * remove 'sort alphabetical order' check * added documentation check * remove extra paranthesis * added gitpod * added gitpod link from README * attempt to add vscode gitpod extensions * update gitpod extensions * add gitpod extensions cmake-tools and git-graph * remove gitpod init and add commands * use init to one time install doxygen, graphviz, cpplint * use gitpod dockerfile * add ninja build system to docker * remove configure task * add github prebuild specs to gitpod * disable gitpod addcommit * update documentation for kohonen_som * added ode solve using forward euler method * added mid-point euler ode solver * fixed itegration step equation * added semi-implicit euler ODE solver * updating DIRECTORY.md * fix cpplint issues - lines 117 and 124 * added documentation to ode group * corrected semi-implicit euler function * updated docs and test cases better structure * replace `free` with `delete` operator * formatting source-code forf55ab50cf2
* updating DIRECTORY.md * main function must return * added machine learning group * added kohonen som topology algorithm * fix graph image path * updating DIRECTORY.md * fix braces * use snprintf instead of sprintf * use static_cast * hardcode character buffer size * fix machine learning groups in documentation * fix missing namespace function * replace kvedala fork references to TheAlgorithms * fix bug in counting_sort Co-authored-by: github-actions <${GITHUB_ACTOR}@users.noreply.github.com> Co-authored-by: Anmol3299 <mittalanmol22@gmail.com>
211 lines
6.1 KiB
C++
211 lines
6.1 KiB
C++
/**
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* @file
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* \brief Library functions to compute [QR
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* decomposition](https://en.wikipedia.org/wiki/QR_decomposition) of a given
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* matrix.
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* \author [Krishna Vedala](https://github.com/kvedala)
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*/
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#ifndef NUMERICAL_METHODS_QR_DECOMPOSE_H_
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#define NUMERICAL_METHODS_QR_DECOMPOSE_H_
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#include <cmath>
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#include <cstdlib>
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#include <iomanip>
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#include <iostream>
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#include <limits>
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#include <numeric>
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#include <valarray>
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#ifdef _OPENMP
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#include <omp.h>
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#endif
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/** \namespace qr_algorithm
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* \brief Functions to compute [QR
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* decomposition](https://en.wikipedia.org/wiki/QR_decomposition) of any
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* rectangular matrix
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*/
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namespace qr_algorithm {
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/**
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* operator to print a matrix
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*/
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template <typename T>
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std::ostream &operator<<(std::ostream &out,
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std::valarray<std::valarray<T>> const &v) {
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const int width = 12;
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const char separator = ' ';
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out.precision(4);
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for (size_t row = 0; row < v.size(); row++) {
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for (size_t col = 0; col < v[row].size(); col++)
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out << std::right << std::setw(width) << std::setfill(separator)
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<< v[row][col];
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out << std::endl;
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}
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return out;
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}
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/**
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* operator to print a vector
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*/
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template <typename T>
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std::ostream &operator<<(std::ostream &out, std::valarray<T> const &v) {
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const int width = 10;
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const char separator = ' ';
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out.precision(4);
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for (size_t row = 0; row < v.size(); row++) {
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out << std::right << std::setw(width) << std::setfill(separator)
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<< v[row];
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}
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return out;
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}
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/**
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* Compute dot product of two vectors of equal lengths
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*
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* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ and
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* \f$\vec{b}=\left[b_0,b_1,b_1,...,b_L\right]\f$ then
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* \f$\vec{a}\cdot\vec{b}=\displaystyle\sum_{i=0}^L a_i\times b_i\f$
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*
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* \returns \f$\vec{a}\cdot\vec{b}\f$
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*/
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template <typename T>
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inline double vector_dot(const std::valarray<T> &a, const std::valarray<T> &b) {
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return (a * b).sum();
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// could also use following
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// return std::inner_product(std::begin(a), std::end(a), std::begin(b),
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// 0.f);
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}
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/**
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* Compute magnitude of vector.
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*
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* If \f$\vec{a}=\left[a_0,a_1,a_2,...,a_L\right]\f$ then
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* \f$\left|\vec{a}\right|=\sqrt{\displaystyle\sum_{i=0}^L a_i^2}\f$
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*
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* \returns \f$\left|\vec{a}\right|\f$
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*/
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template <typename T>
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inline double vector_mag(const std::valarray<T> &a) {
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double dot = vector_dot(a, a);
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return std::sqrt(dot);
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}
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/**
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* Compute projection of vector \f$\vec{a}\f$ on \f$\vec{b}\f$ defined as
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* \f[\text{proj}_\vec{b}\vec{a}=\frac{\vec{a}\cdot\vec{b}}{\left|\vec{b}\right|^2}\vec{b}\f]
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*
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* \returns NULL if error, otherwise pointer to output
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*/
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template <typename T>
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std::valarray<T> vector_proj(const std::valarray<T> &a,
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const std::valarray<T> &b) {
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double num = vector_dot(a, b);
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double deno = vector_dot(b, b);
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/*! check for division by zero using machine epsilon */
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if (deno <= std::numeric_limits<double>::epsilon()) {
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std::cerr << "[" << __func__ << "] Possible division by zero\n";
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return a; // return vector a back
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}
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double scalar = num / deno;
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return b * scalar;
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}
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/**
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* Decompose matrix \f$A\f$ using [Gram-Schmidt
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*process](https://en.wikipedia.org/wiki/QR_decomposition).
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*
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* \f{eqnarray*}{
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* \text{given that}\quad A &=&
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*\left[\mathbf{a}_1,\mathbf{a}_2,\ldots,\mathbf{a}_{N-1},\right]\\
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* \text{where}\quad\mathbf{a}_i &=&
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* \left[a_{0i},a_{1i},a_{2i},\ldots,a_{(M-1)i}\right]^T\quad\ldots\mbox{(column
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* vectors)}\\
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* \text{then}\quad\mathbf{u}_i &=& \mathbf{a}_i
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*-\sum_{j=0}^{i-1}\text{proj}_{\mathbf{u}_j}\mathbf{a}_i\\
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* \mathbf{e}_i &=&\frac{\mathbf{u}_i}{\left|\mathbf{u}_i\right|}\\
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* Q &=& \begin{bmatrix}\mathbf{e}_0 & \mathbf{e}_1 & \mathbf{e}_2 & \dots &
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* \mathbf{e}_{N-1}\end{bmatrix}\\
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* R &=& \begin{bmatrix}\langle\mathbf{e}_0\,,\mathbf{a}_0\rangle &
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* \langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
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* \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots \\
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* 0 & \langle\mathbf{e}_1\,,\mathbf{a}_1\rangle &
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* \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle & \dots\\
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* 0 & 0 & \langle\mathbf{e}_2\,,\mathbf{a}_2\rangle &
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* \dots\\ \vdots & \vdots & \vdots & \ddots
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* \end{bmatrix}\\
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* \f}
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*/
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template <typename T>
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void qr_decompose(
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const std::valarray<std::valarray<T>> &A, /**< input matrix to decompose */
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std::valarray<std::valarray<T>> *Q, /**< output decomposed matrix */
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std::valarray<std::valarray<T>> *R /**< output decomposed matrix */
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) {
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std::size_t ROWS = A.size(); // number of rows of A
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std::size_t COLUMNS = A[0].size(); // number of columns of A
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std::valarray<T> col_vector(ROWS);
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std::valarray<T> col_vector2(ROWS);
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std::valarray<T> tmp_vector(ROWS);
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for (int i = 0; i < COLUMNS; i++) {
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/* for each column => R is a square matrix of NxN */
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int j;
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R[0][i] = 0.; /* make R upper triangular */
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/* get corresponding Q vector */
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (j = 0; j < ROWS; j++) {
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tmp_vector[j] = A[j][i]; /* accumulator for uk */
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col_vector[j] = A[j][i];
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}
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for (j = 0; j < i; j++) {
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for (int k = 0; k < ROWS; k++) {
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col_vector2[k] = Q[0][k][j];
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}
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col_vector2 = vector_proj(col_vector, col_vector2);
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tmp_vector -= col_vector2;
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}
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double mag = vector_mag(tmp_vector);
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (j = 0; j < ROWS; j++) Q[0][j][i] = tmp_vector[j] / mag;
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/* compute upper triangular values of R */
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (int kk = 0; kk < ROWS; kk++) {
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col_vector[kk] = Q[0][kk][i];
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}
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#ifdef _OPENMP
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// parallelize on threads
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#pragma omp for
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#endif
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for (int k = i; k < COLUMNS; k++) {
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for (int kk = 0; kk < ROWS; kk++) {
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col_vector2[kk] = A[kk][k];
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}
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R[0][i][k] = (col_vector * col_vector2).sum();
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}
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}
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}
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} // namespace qr_algorithm
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#endif // NUMERICAL_METHODS_QR_DECOMPOSE_H_
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