TheAlgorithms-C-Plus-Plus/math/realtime_stats.cpp
Krishna Vedala aaa08b0150
Major rework to improve code quality and add automation checks (#805)
* delete secant method - it is identical to regula falsi

* document + improvize root finding algorithms

* attempt to document gaussian elimination

* added file brief

* commented doxygen-mainpage, added files-list link

* corrected files list link path

* files-list link correction - this time works :)

* document successive approximations

* cleaner equation

* updating DIRECTORY.md

* documented kmp string search

* document brute force string search

* document rabin-karp string search

* fixed mainpage readme

* doxygen v1.8.18 will suppress out the #minipage in the markdown

* cpplint correction for header guard style

* github action to auto format source code per cpplint standard

* updated setting to add 1 space before `private` and `public` keywords

* auto rename files and auto format code

* added missing "run" for step

* corrected asignmemt operation

* fixed trim and assign syntax

* added git move for renaming bad filenames

* added missing pipe for trim

* added missing space

* use old and new fnames

* store old fname using echo

* move files only if there is a change in filename

* put old filenames in quotes

* use double quote for old filename

* escape double quotes

* remove old_fname

* try escape characters and echo"

* add file-type to find

* cleanup echo

* ensure all trim variables are also in quotes

* try escape -quote again

* remove second escpe quote

* use single quote for first check

* use carets instead of quotes

* put variables in brackets

* remove -e from echo

* add debug echos

* try print0 flag

* find command with while instead of for-loop

* find command using IFS instead

* 🎉 IFS fix worked - escaped quotes for git mv

* protetc each word in git mv ..

* filename exists in lower cases - renamed

* 🎉 git push enabled

* updating DIRECTORY.md

* git pull & then push

* formatting filenames d7af6fdc8c

* formatting source-code for d7af6fdc8c

* remove allman break before braces

* updating DIRECTORY.md

* added missing comma lost in previous commit

* orchestrate all workflows

* fix yml indentation

* force push format changes, add title to DIRECTORY.md

* pull before proceeding

* reorganize pull commands

* use master branches for actions

* rename .cc files to .cpp

* added class destructor to clean up dynamic memory allocation

* rename to awesome workflow

* commented whole repo cpplint - added modified files lint check

* removed need for cpplint

* attempt to use actions/checkout@master

* temporary: no dependency on cpplint

* formatting filenames 153fb7b8a5

* formatting source-code for 153fb7b8a5

* updating DIRECTORY.md

* fix diff filename

* added comments to the code

* added test case

* formatting source-code for a850308fba

* updating DIRECTORY.md

* added machine learning folder

* added adaline algorithm

* updating DIRECTORY.md

* fixed issue [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS

* add cmath for same bug: [LWG2192](https://cplusplus.github.io/LWG/issue2192) for std::abs on MacOS

* formatting source-code for f8925e4822

* use STL's inner_product

* formatting source-code for f94a330594

* added range comments

* define activation function

* use equal initial weights

* change test2 function to predict

* activation function not friend

* previous commit correction

* added option for predict function to return value before applying activation function as optional argument

* added test case to classify points lying within a sphere

* improve documentation for adaline

* formatting source-code for 15ec4c3aba

* added cmake to geometry folder

* added algorithm include for std::max

* add namespace - machine_learning

* add namespace - statistics

* add namespace - sorting

* added sorting algos to namespace sorting

* added namespace string_search

* formatting source-code for fd69530515

* added documentation to string_search namespace

* feat: Add BFS and DFS algorithms to check for cycle in a directed graph

* Remove const references for input of simple types

Reason: overhead on access

* fix bad code

sorry for force push

* Use pointer instead of the non-const reference

because apparently google says so.

* Remove a useless and possibly bad Graph constuctor overload

* Explicitely specify type of vector during graph instantiation

* updating DIRECTORY.md

* find openMP before adding subdirectories

* added kohonen self organizing map

* updating DIRECTORY.md

* remove older files and folders from gh-pages before adding new files

* remove chronos library due to inacceptability by cpplint

* use c++ specific static_cast instead

* initialize radom number generator

* updated image links with those from CPP repository

* rename computer.... folder to numerical methods

* added durand kerner method for root computation for arbitrarily large polynomials

* fixed additional comma

* fix cpplint errors

* updating DIRECTORY.md

* convert to function module

* update documentation

* move openmp to main loop

* added two test cases

* use INT16_MAX

* remove return statement from omp-for loop and use "break"

* run tests when no input is provided and skip tests when input polynomial is provided

* while loop cannot have break - replaced with continue and check is present in the main while condition

* (1) break while loop (2) skip runs on break_loop instead of hard-break

* add documentation images

* use long double for errors and tolerance checks

* make iterator variable i local to threads

* add critical secions to omp threads

* bugfix: move file writing outside of the parallel loop
othersie, there is no gurantee of the order of roots written to file

* rename folder to data_structures

* updating DIRECTORY.md

* fix ambiguous symbol `size`

* add data_structures to cmake

* docs: enable tree view, add timestamp in footer, try clang assistaed parsing

* doxygen - open links in external window

* remove invalid parameter from function docs

* use HTML5 img tag to resize images

* move file to proper folder

* fix documentations and cpplint

* formatting source-code for aacaf9828c

* updating DIRECTORY.md

* cpplint: add braces for multiple statement if

* add explicit link to badges

* remove  duplicate line

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* remove namespace indentation

* remove file associations in settings

* add author name

* enable cmake in subfolders of data_structures

* create and link object file

* cpp lint fixes and instantiate template classes

* cpp lint fixes and instantiate template classes

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* cpplint - ignore `build/include`

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* disable redundant gcc compilation in cpplint workflow

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* template header files contain function codes as well and removed redundant subfolders

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* updating DIRECTORY.md

* remove semicolons after functions in a class

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* cpplint header guard style

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* remove semilon

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* added LU decomposition algorithm

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* added QR decomposition algorithm

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* use QR decomposition to find eigen values

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* updating DIRECTORY.md

* use std::rand for thread safety

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* move srand to main()

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* cpplint braces correction

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* updated eigen value documentation

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* fix matrix shift doc

Signed-off-by: Krishna Vedala <7001608+kvedala@users.noreply.github.com>

* rename CONTRIBUTION.md to CONTRIBUTING.md #836

* remove 'sort alphabetical order' check

* added documentation check

* remove extra paranthesis

* added gitpod

* added gitpod link from README

* attempt to add vscode gitpod extensions

* update gitpod extensions

* add gitpod extensions cmake-tools and git-graph

* remove gitpod init and add commands

* use init to one time install doxygen, graphviz, cpplint

* use gitpod dockerfile

* add ninja build system to docker

* remove configure task

* add github prebuild specs to gitpod

* disable gitpod addcommit

* update documentation for kohonen_som

* added ode solve using forward euler method

* added mid-point euler ode solver

* fixed itegration step equation

* added semi-implicit euler ODE solver

* updating DIRECTORY.md

* fix cpplint issues - lines 117 and 124

* added documentation to ode group

* corrected semi-implicit euler function

* updated docs and test cases better structure

* replace `free` with `delete` operator

* formatting source-code for f55ab50cf2

* updating DIRECTORY.md

* main function must return

* added machine learning group

* added kohonen som topology algorithm

* fix graph image path

* updating DIRECTORY.md

* fix braces

* use snprintf instead of sprintf

* use static_cast

* hardcode character buffer size

* fix machine learning groups in documentation

* fix missing namespace function

* replace kvedala fork references to TheAlgorithms

* fix bug in counting_sort

Co-authored-by: github-actions <${GITHUB_ACTOR}@users.noreply.github.com>
Co-authored-by: Anmol3299 <mittalanmol22@gmail.com>
2020-06-19 21:34:56 +05:30

194 lines
5.4 KiB
C++

/**
* \file
* \brief Compute statistics for data entered in rreal-time
*
* This algorithm is really beneficial to compute statistics on data read in
* realtime. For example, devices reading biometrics data. The algorithm is
* simple enough to be easily implemented in an embedded system.
* \author [Krishna Vedala](https://github.com/kvedala)
*/
#include <cassert>
#include <cmath>
#include <iostream>
/**
* \namespace statistics
* \brief Statistical algorithms
*/
namespace statistics {
/**
* continuous mean and variance computance using
* first value as an approximation for the mean.
* If the first number is much far form the mean, the algorithm becomes very
* inaccurate to compute variance and standard deviation.
*/
template <typename T>
class stats_computer1 {
public:
/** Constructor
* \param[in] x new data sample
*/
void new_val(T x) {
if (n == 0)
K = x;
n++;
T tmp = x - K;
Ex += tmp;
Ex2 += tmp * tmp;
}
/** return sample mean computed till last sample */
double mean() const { return K + Ex / n; }
/** return data variance computed till last sample */
double variance() const { return (Ex2 - (Ex * Ex) / n) / (n - 1); }
/** return sample standard deviation computed till last sample */
double std() const { return std::sqrt(this->variance()); }
/** short-hand operator to read new sample from input stream
* \n e.g.: `std::cin >> stats1;`
*/
friend std::istream &operator>>(std::istream &input,
stats_computer1 &stat) {
T val;
input >> val;
stat.new_val(val);
return input;
}
private:
unsigned int n = 0;
double Ex, Ex2;
T K;
};
/**
* continuous mean and variance computance using
* Welford's algorithm (very accurate)
*/
template <typename T>
class stats_computer2 {
public:
/** Constructor
* \param[in] x new data sample
*/
void new_val(T x) {
n++;
double delta = x - mu;
mu += delta / n;
double delta2 = x - mu;
M += delta * delta2;
}
/** return sample mean computed till last sample */
double mean() const { return mu; }
/** return data variance computed till last sample */
double variance() const { return M / n; }
/** return sample standard deviation computed till last sample */
double std() const { return std::sqrt(this->variance()); }
/** short-hand operator to read new sample from input stream
* \n e.g.: `std::cin >> stats1;`
*/
friend std::istream &operator>>(std::istream &input,
stats_computer2 &stat) {
T val;
input >> val;
stat.new_val(val);
return input;
}
private:
unsigned int n = 0;
double mu = 0, var = 0, M = 0;
};
} // namespace statistics
using statistics::stats_computer1;
using statistics::stats_computer2;
/** Test the algorithm implementation
* \param[in] test_data array of data to test the algorithms
*/
void test_function(const float *test_data, const int number_of_samples) {
float mean = 0.f, variance = 0.f;
stats_computer1<float> stats01;
stats_computer2<float> stats02;
for (int i = 0; i < number_of_samples; i++) {
stats01.new_val(test_data[i]);
stats02.new_val(test_data[i]);
mean += test_data[i];
}
mean /= number_of_samples;
for (int i = 0; i < number_of_samples; i++) {
float temp = test_data[i] - mean;
variance += temp * temp;
}
variance /= number_of_samples;
std::cout << "<<<<<<<< Test Function >>>>>>>>" << std::endl
<< "Expected: Mean: " << mean << "\t Variance: " << variance
<< std::endl;
std::cout << "\tMethod 1:"
<< "\tMean: " << stats01.mean()
<< "\t Variance: " << stats01.variance()
<< "\t Std: " << stats01.std() << std::endl;
std::cout << "\tMethod 2:"
<< "\tMean: " << stats02.mean()
<< "\t Variance: " << stats02.variance()
<< "\t Std: " << stats02.std() << std::endl;
assert(std::abs(stats01.mean() - mean) < 0.01);
assert(std::abs(stats02.mean() - mean) < 0.01);
assert(std::abs(stats02.variance() - variance) < 0.01);
std::cout << "(Tests passed)" << std::endl;
}
/** Main function */
int main(int argc, char **argv) {
const float test_data1[] = {3, 4, 5, -1.4, -3.6, 1.9, 1.};
test_function(test_data1, sizeof(test_data1) / sizeof(test_data1[0]));
std::cout
<< "Enter data. Any non-numeric data will terminate the data input."
<< std::endl;
stats_computer1<float> stats1;
stats_computer2<float> stats2;
while (1) {
double val;
std::cout << "Enter number: ";
std::cin >> val;
// check for failure to read input. Happens for
// non-numeric data
if (std::cin.fail())
break;
stats1.new_val(val);
stats2.new_val(val);
std::cout << "\tMethod 1:"
<< "\tMean: " << stats1.mean()
<< "\t Variance: " << stats1.variance()
<< "\t Std: " << stats1.std() << std::endl;
std::cout << "\tMethod 2:"
<< "\tMean: " << stats2.mean()
<< "\t Variance: " << stats2.variance()
<< "\t Std: " << stats2.std() << std::endl;
}
return 0;
}